GIP

• Introduction to GIP
  • Distribution
  • Why using GIP?
  • GIP analyses overview
• Input and output organization
  • Input
  • Output
• GIP steps
  • Prepare genome and annotation
  • Map reads and collect alignment statistics
  • Evaluate chromosome coverage
  • Measure genomic bin sequencing coverage
  • Measure gene sequencing coverage
  • Detect, annotate and filter single nucleotide variants
  • Detect and filter structural variants
  • Define and quantify gene clusters
• Worked example
  • Installing Dependencies
  • Installing GIP
  • Data acquisition
  • GIP configuration
  • GIP execution
• Parameters guidelines